http://homer.ucsd.edu/homer/motif/rnaMotifs.html Web16 lug 2024 · However, the motifs predicted by BioProspector, MEME and Homer are, on basis of this metric, consistently better than motifs predicted by other methods. In 75% of the cases, the motif predicted by BioProspector has a difference in recall smaller than 0.026 compared to the best overall motif.
CSA: a web service for the complete process of ChIP-Seq analysis
WebMoLoTool - web interface for motif finding. SPRY-SARUS tool for motif finding (Java): jar, readme. MACRO-APE tool for motif comparison, P-value and threshold estimation: jar, manual, website. PERFECTOS-APE tool for functional annotation of sequence variants overlappint TFBS: jar, manual, website. WebHomer Motifs. Motif: Best Match/Details: Motif File: T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C: AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq ... terri spottswood real estate
Homer Software and Data Download
WebHOMER Software for motif discovery and next-gen sequencing analysis HOMER Motif Analysis HOMER contains a novel motif discovery algorithm that was designed for … Homer Software and Data Download HOMER Software for motif discovery … scanMotifGenomeWide.pl [options] … HOMER Software for motif discovery and next-gen sequencing analysis Creating … Since HOMER is an empirical motif finding program, it starts from actual oligos … HOMER is designed to analyze high-throughput data using differential motif … HOMER can analyze strand-specific genomic regions for motifs, such as the … Since HOMER is a differential motif discovery algorithm, common repeats … HOMER contains a custom motif database based on independent analysis of … http://homer.ucsd.edu/homer/motif/ WebThis is local homer motif database. co_occur_motifs.stats.txt contains the co-occuring statistics. output.tsv is the peak annotation file, with additional motif occurrence … terrispoark boots craftng guide